Qtl cartographer 2.5

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WebMar 28, 2012 · QTLs were detected by composite interval mapping (CIM) using WinQTL cartographer 2.5 software (http://statgen.ncsu.edu/qtlcar/WQTLCart.htm) (Wang et al., 2006). For each trait, QTL threshold... WebMay 26, 2024 · With the ultra-high-density linkage maps, a total of four QTLs were identified after 1000 permutations with an empirical logarithm of the odds (LOD) threshold of 3.5, 4.0 and 3.5 for HL, HN and HW, respectively (Table 2 and Fig. 2 ). The average of QTL intervals was 6.0 Mb with a range of 5.1–8.9 Mb.

WINQTLCartographer2.5应用介绍_word文档在线阅读与下载_文档网

WebSep 9, 2024 · The composite interval mapping (CIM) method in Windows QTL Cartographer 2.5 was used for QTL calling with the logarithm of odds (LOD) threshold of 3.0 (Wang et al., 2010). The percentage of the phenotypic variance explained by a QTL was indicated by the determination coefficient (R 2 %). Analysis of candidate genes in the target mapping … WebJan 1, 1996 · QTL mapping was conducted by QTL Cartographer 2.5 (Basten et al. 1997) with the composite interval mapping method (Zeng 1994). The permutation test was run … group tech multiservice

Identification of QTLs and joint QTL segments of leaflet traits at ...

WebApr 18, 2024 · To maximize the mapping accuracy, a two-step procedures involving WinQTL cartographer 2.5 based on a composite interval mapping (CIM) model and QTLNetwork … WebApr 12, 2024 · In TOC1, three QTLs (qOC-1-1, qOC-1-2 and qOC-1-3) distributed on chromosome 3, 5 and 9.The QTL, qOC-1-3, with the largest effect (30.84% of the phenotypic variation) was located on chromosome 9.The parental KB717001 allele at this locus had an additive effect of 0.24% for increased oil content. The second QTL qOC-1-2 was located … WebJun 1, 2024 · QTL analysis was performed by composite interval mapping (CIM) method using Windows QTL Cartographer 2.5 software (Wang et al. 2007) with a logarithm of … filming businees plans

Identification and Validation of QTLs for Macronutrient ... - Hindawi

Wang, S., Basten, C.J. and Zeng, Z.B. (2012) Windows QTL Cartographer 2

WebComposite interval mapping and multiple interval mapping: procedures and guidelines for using Windows QTL Cartographer. Tremendous progress has been made in recent years … WebWinQTLCart Windows QTL Cartographer V2.5 WinQTLCart Cartographer QTL Cartographer is WinQTLCart's command-line sibling. QTLCart is a suite of command-line programs to map quantitative traits using a map of molecular The programs … group teaching in preschoolWebStep 3—Analyzing data using QTL Mapping Methods With WinQTLCart able to view the data, you can then select any of six different analysis methods. The end result for some of these methods is another MCD file, but in most cases the process will create a .QRT result file that WinQTLCart can use to graph QTL information. grouptech inc

"WebWindows QTL Cartographer maps quantitative trait loci (QTL) in cross populations from inbred lines. WinQTLCart includes a powerful graphic tool for presenting mapping results … QTL Cartographer is a suite of programs to map quantitative traits using a map of … " - Qtl cartographer 2.5

Qtl cartographer 2.5

Web3. For the MapMaker/QTL and QTL Cartographer options, you need to locate and select the Map and Cross Data files by clicking the buttons. For Excel spreadsheets, you only need to specify one spreadsheet (WinQTLCart disables the Cross Data button for Excel imports). 4. WebApr 11, 2016 · Windows QTL Cartographer 2.5 was used to identify QTLs by composite interval mapping method on the environment by environment basis of the 11 environments. The LOD threshold for declaring significant QTLs included the QTLs across environments calculated by a permutation test with the mapping step of 1.0 cM, five control markers, …

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WebDec 1, 2024 · Windows QTL cartographer 2.5 (Wang et al. 2012) was used to perform QTL analysis. Composite interval mapping (CIM) analysis was performed using Kosambi map function with Ri1 cross type (recombinant inbred line, derived by selfing), and forward and backward regression method was used with F-in and F-out equal to 0.01 selection criteria. ... http://statgen.ncsu.edu/qtlcart/WinQTLCart.pdf

WebThe results of several QTL mapping studies have indicated that there are only few major genes, which interact with numerous minor genes and environment to give continuous trait phenotype characteristic of quantitative traits. Thus …

WebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between … WebWindows QTL Cartographer V2.5 WinQTLCart Installation Making sure you have the latest release If you already have a version of WinQTLCart on your PC: Open your version of …

WebOct 7, 2024 · The composite interval mapping (CIM) of Windows QTL Cartographer 2.5 software (Wang et al. 2012) was used to identify QTLs of leaflet traits under different environments. The threshold of LOD values were estimated from 1000 permutation tests for declaring a significant QTL.

Web以育性转换表现为'长光高温下可育,短光低温下不育'反(向)光、温敏核不育种质5021S为材料,5021S与轮回422杂交组合F2作为遗传群体进行育性相关基因的QTL定位,利用124对SSR标记构建了一张全长1912.3 cM平均图距为14.98 cM的饱和分子连锁图谱.利 … group techni innov importWeb8 Windows QTL Cartographer 2.5 Chromosome graph - Menus - Setting Command Function Select Chromosomes Select chromosomes to be showed in graph. Show Chromosome … group/team cohesion in sportWebDec 1, 2024 · The contribution rate (R 2) and additive effect of a presumptive QTL were simultaneously calculated using Windows QTL Cartographer 2.5. The QTL nomenclature described by McCouch et al. (1997) was adopted in this study, each designation was named begins with ‘q’ followed by the abbreviation of the trait name, the linkage group, and the ... group teamwork activities for teensWebQTL Cartographer Record added by Jurg Ott (the original Rockefeller list) Version Window version 2.5 (September 2006) Description A program to map quantitative traits sing a … filming by xrayWebqtl×环境互作分析表明, 仅qph1-1、qflw2、qepp1和qtgw5-1 4个qtl存在显著的加性×环境互作效应。进一步对qtgw5-1定位区间所包含的gw5测序分析表明, 高产株系和低产株系的gw5等位基因分别来自亲本中嘉早17和d50, 这与检测到的qtgw5-1的加性效应来自亲本中嘉早17相符。 ... filming cameras being usedWebJan 21, 2024 · QTL mapping. The WinQTL Cartographer 2.5 with the CIM algorithm was used to identify the QTLs for eight traits in the four F 2 populations. As a result, a total of 50 QTLs with R 2 of 0.1–59.24% were identified, 27 were for fiber quality traits and 16 were for yield traits. A total of 23, 4, 8, ... filming businessWebDec 9, 2016 · Although below the threshold (2.5), the LOD score of qWCR1 was 2.18 in 2012. qWCR2 was only identified in 2012; nevertheless, it shared the same interval with the major QTL qWBR2. The remaining QTLs, qWCR3 and qWCR6, were only detected in 2011 and explained 6.4 and 8.2% of the phenotypic variation, respectively. group tears for fears